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Table 1 Primers used to detect HPV in clinical samples.

From: Sensitive HPV detection in oropharyngeal cancers

Primer Set

Primer name

5'-3' sequence

GP5+/GP6+

GP5+

TTT GTT ACT GTG GTA GAT ACT AC

 

GP6+

GAA AAA TAA ACT GTA AAT CAT ATT C

MY09/11

MY09

CGT CCM ARR GGA WAC TGA TC

 

MY11

GCM CAG GGW CAT AAY AAT GG

PGMY09/11

PGMY11-A

GCA CAG GGA CAT AAC AAT GG

 

PGMY11-B

GCG CAG GGC CAC AAT AAT GG

 

PGMY11-C

GCA CAG GGA CAT AAT AAT GG

 

PGMY11-D

GCC CAG GGC CAC AAC AAT GG

 

PGMY11-E

GCT CAG GGT TTA AAC AAT GG

 

PGMY09-F

CGT CCC AAA GGA AAC TGA TC

 

PGMY09-G

CGA CCT AAA GGA AAC TGA TC

 

PGMY09-H

CGT CCA AAA GGA AAC TGA TC

 

PGMY09-I

G CCA AGG GGA AAC TGA TC

 

PGMY09-J

CGT CCC AAA GGA TAC TGA TC

 

PGMY09-K

CGT CCA AGG GGA TAC TGA TC

 

PGMY09-L

CGA CCT AAA GGG AAT TGA TC

 

PGMY09-M

CGA CCT AGT GGA AAT TGA TC

 

PGMY09-N

CGA CCA AGG GGA TAT TGA TC

 

PGMY09-P

G CCC AAC GGA AAC TGA TC

 

PGMY09-Q

CGA CCC AAG GGA AAC TGG TC

 

PGMY09-R

CGT CCT AAA GGA AAC TGG TC

 

HMB01

GCG ACC CAA TGC AAA TTG GT

 

GH2O

GAA GAG CCA AGG ACA GGT AC

 

PCO4

CAA CTT CAT CCA CGT TCA CC

  1. Primer sets, names and sequences used for the detection of HPV in clinical samples. GP5+/GP6+ and MY09/11 PCRs consist of a single forward and reverse primers, whereas the PGMY09/11 set comprises 5 forward (11A-E) and 13 reverse (09F-HMB01) primers and includes GH2O and PCO4 β-actin internal controls.