Table 2 Integration of copy number with gene expression data in > samples
Cyto-band | Gene Symbol | p-value | Fold-Change | length (bps) | Copy Number Location | Copy state | # Samples | Mean copy # |
|---|---|---|---|---|---|---|---|---|
1q21.2 | SV2A | 0.000790217 | 2.35 | 1228718 | chr1.147361719.148590436 | gain | 6 | 2.93 |
1q21.2 | LOC730631 | 0.000454988 | 2.12 | 1228718 | chr1.147361719.148590436 | gain | 6 | 2.93 |
1q21.3 | S100A14 | 0.00103078 | 13.49 | 145569 | chr1.151766410.151911978 | gain | 6 | 3.27 |
1q22 | MUC1 | 3.86E-05 | 5.12 | 1636566 | chr1.152807193.154443758 | gain | 6 | 2.79 |
1q23.2 | IGSF9 | 1.70E-06 | 6.69 | 82022 | chr1.158101327.158183348 | gain | 5 | 2.75 |
1q25.2 | TDRD5 | 5.76E-08 | 2.49 | 76749 | chr1.177855168.177931916 | gain | 6 | 3.12 |
1q32.1 | PCTK3 | 0.000647034 | 2.12 | 57388 | chr1.203711819.203769206 | gain | 7 | 2.12 |
1q41 | CAPN8 | 5.28E-05 | 7.01 | 1214960 | chr1.221390196.222605155 | gain | 6 | 2.76 |
1p34.1 | ST3GAL3 | 0.00102362 | -3.50 | 52158 | chr1.44004795.44064981 | loss | 5 | 1.14 |
11p13 | PRRG4 | 1.96E-07 | 4.61 | 129389 | chr11.32799917.32929305 | gain | 7 | 3.42 |
11p11.2 | PACSIN3 | 0.000775686 | 2.11 | 271627 | chr11.47122445.47394071 | gain | 5 | 3.48 |
14q24.1 | WDR22 | 5.46E-09 | -2.06 | 2588491 | chr14.68430400.69090879 | loss | 5 | 1.49 |
15q23 | Hs.655686 | 5.25E-06 | 11.48 | 1692519 | chr15.68908327.69703941 | gain | 5 | 2.58 |
15q23 | Hs.655868 | 0.000235216 | 3.68 | 504419 | chr15.69797809.70302227 | gain | 6 | 2.61 |
15q24.1 | NEO1 | 0.00012075 | 2.11 | 843811 | chr15.70912294.71756104 | gain | 7 | 3.37 |
15q26.1 | ISG20 | 1.92E-06 | 3.16 | 249550 | chr15.86957456.87207005 | gain | 6 | 2.84 |
15q26.1 | FAM174B | 0.000142779 | 4.64 | 127979 | chr15.90953124.91081102 | gain | 5 | 3.50 |
15q26.1 | FAM174B | 4.31E-07 | 3.39 | 127979 | chr15.90953124.91081102 | gain | 5 | 3.50 |
5p15.33 | PLEKHG4B | 0.000905578 | 2.33 | 352294 | chr5.165712.518005 | gain | 5 | 3.26 |
6p24.3 | TFAP2A | 0.000412702 | 28.92 | 61721 | chr6.10487807.10549527 | gain | 7 | 4.42 |
8q23.3 | TRPS1 | 0.000200736 | 4.98 | 1434519 | chr8.116140217.117574735 | gain | 5 | 3.65 |
8p22 | DLC1 | 7.07E-05 | -6.72 | 6333283 | chr8.11614644.13945615 | loss | 6 | 1.49 |
8p21.3 | GFRA2 | 1.72E-10 | -2.18 | 1541653 | chr8.20297943.21825688 | loss | 6 | 1.38 |
8p21.2 | EBF2 | 5.96E-08 | -4.59 | 61487 | chr8.25917207.25978693 | loss | 5 | 1.46 |
8p21.2 | AK057935 | 0.000340165 | -8.34 | 798818 | chr8.26553995.26777510 | loss | 6 | 1.47 |
8p12 | Hs.654357 | 3.39E-06 | -3.64 | 1469584 | chr8.29124128.30492208 | loss | 5 | 1.48 |
8q12.1 | SDR16C5 | 0.00075179 | 7.97 | 689931 | chr8.56762001.57376988 | gain | 5 | 2.99 |
8p23.1 | ANGPT2 | 2.01E-06 | -6.11 | 168439 | chr8.6342789.6444367 | loss | 5 | 1.45 |
8p23.1 | DEFA1 /// DEFA3 /// LOC728358 | 6.87E-05 | -3.05 | 1406779 | chr8.6789275.6889920 | loss | 6 | 1.40 |
8q21.13 | CHMP4C | 0.000234239 | 16.46 | 5693518 | chr8.81713285.87406802 | gain | 5 | 3.22 |
Xq22.3 | Hs.715776 | 2.99E-07 | -9.24 | 16623258 | chrX.102883803.119358070 | loss | 5 | 1.52 |
Xq22.3 | LOC100130886 /// TMEM164 | 0.000421953 | -2.37 | 16623258 | chrX.102883803.119358070 | loss | 5 | 1.52 |
Xq24 | GLUD2 | 6.93E-06 | -2.65 | 2753995 | chrX.119455338.122209332 | loss | 5 | 1.51 |
Xq25 | XPNPEP2 | 6.87E-08 | -3.81 | 7869983 | chrX.128566292.129127918 | loss | 5 | 1.51 |