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Table 4 BAC clones and chromosomal location with significant differences in deletion frequency between patients in the Recurrence and Non-recurrence groups

From: Genomic alterations identified by array comparative genomic hybridization as prognostic markers in tamoxifen-treated estrogen receptor-positive breast cancer

BAC clone

Chromosome location

Representative genes

No. of losses in the Recurrence group

No. of losses in the Non-recurrence group

Adjusted p value

BAC165_D01

11p15.5

RIC8A, SIRT3, PSMD13, NALP6, MRPS24P1, IFITM2

6

1

<0.001

BAC121_J14

11p15.5

TOLLIP, STK29

6

1

<0.001

BAC60_J23

11p15.4

KCNQ1, CDKN1C, KCNQ1DN, SLC22A1LS, SLC22A18

6

1

<0.001

BAC252_K02

11p15.4

PHLDA2, NAP1L4

6

1

<0.001

BAC193_P15

11p15.4

NUP98, FRAG1, RHOG, STIM1

6

1

<0.001

BAC121_J11

11p15.4

SMPD1, APBB1, HPX

6

1

<0.001

BAC91_J13

11p15.4

TRIM3, ARFIP2, FXC1

6

1

<0.001

BAC88_B15

11p15.3

USP47

6

2

0.002

BAC82_C10

11p15.3-15.2

 

6

2

0.002

BAC35_I01

11p15.2

PDE3B, CYP2R1, CALCP

6

2

0.002

BAC219_F22

11p15.4

ILK, TAF10, CLN2, PCDH16

6

2

0.002

BAC96_J11

11p15.4

TUB, RIC3

6

2

0.002

BAC195_A16

11p15.4

STK33

6

2

0.002

BAC32_K13

11p15.4

ST5

6

2

0.002

BAC185_G10

11p15.4

C11orf16, ASCL3, C11orf15, NRIP3, SCUBE2

6

2

0.002

BAC252_G23

11p15.4

XLKD1, MRVI1

6

2

0.002

BAC96_G07

11q13.4

POLD3, CHRDL2

5

1

0.002

BAC15_I17

22q12.3-13.1

TMPRSS6, IL2RB, C1QTNF6, SSTR3, RAC2

3

0

0.008

BAC230_P11

1p36.33

SLC35E2

3

0

0.008

BAC101_I16

1p36.33

 

3

0

0.008

BAC176_F17

1p36.33

PRKCZ, SKI

3

0

0.008

BAC38_N15

1p36.33

SKI

3

0

0.008

BAC131_H09

22q12.3

MYH9

3

0

0.008

BAC141_N19

1p36.32

WDR8, TP73,

3

0

0.008

BAC120_F15

1p35.3

EYA3

3

0

0.008

BAC171_P09

1p36.32

 

3

0

0.008

BAC90_A08

1p36.22

FRAP1, CDT6, TERE1

3

0

0.008

BAC180_C01

1p36.22

AGTRAP, DKFZp434E1410, MTHFR, CLCN6

3

0

0.008

BAC91_A07

1p36.21

 

3

0

0.008

BAC80_C03

1p36.13

SHARP, ZBTB17, HSPB7, CLCNKA, CLCNKB

3

0

0.008

BAC68_M07

1p36.12

ALPL

3

0

0.008

BAC133_M03

1p36.12

RAP1GA1, USP48

3

0

0.008

BAC13_F18

1p36.12

CDC42, WNT4

3

0

0.008

BAC236_J05

1p36.11

MPRA, STMN1

3

0

0.008

BAC37_K05

1p36.11-35.3

FGR, G1P3, STX12

3

0

0.008

BAC46_E05

1p35.3

EYA3

3

0

0.008

BAC116_D07

11q13.5

UVRAG

5

2

0.010

BAC222_F09

11q13.5

C11orf30

5

2

0.010

BAC144_K18

11q13.5

GARP

5

2

0.010

BAC195_B24

17p13.1

ASGR1, DLG4, ACADVL, DVL2, GABARAP, DULLARD, DERP6, CLDN7, SLC2A4, YBX2, EIF5A, GPS2

5

2

0.010

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BMC Cancer

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