| NER | BER | MMR | SSA | NHEJ | MMEJ | HR | FANCONI | DR | TLS |
---|
NER | 14 [30]
| Â | Â | Â | Â | Â | Â | Â | Â | Â |
BER | 8 [19]
| 17 [47]
| Â | Â | Â | Â | Â | Â | Â | Â |
MMR | 3 [9]
| 6 [21]
| 10 [47]
| Â | Â | Â | Â | Â | Â | Â |
SSA | 1 [2]
| 1 [9]
| 2 [13]
| 4 [16]
| Â | Â | Â | Â | Â | Â |
NHEJ | - | 1 [5]
| - | - | 4 [13]
| Â | Â | Â | Â | Â |
MMEJ | 5 [8]
| 3 [4]
| 2 [2]
| 1 [2]
| - | 7 [13]
| Â | Â | Â | Â |
HR | - | 2 [10]
| 1 [1]
| 1 [1]
| 1 [5]
| 2 [5]
| 13 [47]
| Â | Â | Â |
FANCONI | 2 [4]
| - | - | 1 [2]
| - | 2 [4]
| 4 [21]
| 7 [34]
| Â | Â |
DR | - | - | - | - | - | - | - | - | 1 [4]
| Â |
TLS | 1 [3]
| 1 [3]
| 1 [3]
| - | - | - | 2 [9]
| 3 [18]
| - | 4 [21]
|
-
NER nucleotide excision repair, BER base excision repair, MMR mismatch repair, SSA Single strand annealing, NHEJ non-homologous end joining, MMEJ microhomology-mediated end joining, HR homologous recombination, FANCONI Fanconi pathway, DR Direct repair, TLS translesion synthesis
- The 43 tested genes per DNA repair modules, with number of tested SNPs per gene indicated in brackets, are the following (some genes act in several modules): NER: ERCC1 [2], ERCC2 [2], ERCC3 [2], ERCC4 [2], ERCC5 [2], ERCC6 [2], LIG1 [5], LIG3 [1], PCNA [3], POLD1 [1], RAD23B [3], XPA [1], XPC [2], XRCC1 [2]; BER: APEX1 [1], ERCC5 [2], LIG1 [5], LIG3 [1], MBD4 [1], MLH1 [2], MSH2 [9], MSH6 [1], OGG1 [2], PARP1 [5], PCNA [3], POLB [2], POLD1 [1], RAD23B [3], WRN [5], XPC [2], XRCC1 [2]; MMR: EXO1 [1], LIG1 [5], MLH1 [2], MSH2 [9], MSH3 [4], MSH6 [1], PCNA [3], PMS1 [18], PMS2 [3], POLD1 [1]; SSA: ERCC1 [2], MSH2 [9], MSH3 [4], RAD52 [1]; NHEJ: LIG4 [1], PARP1 [5], XRCC4 [3], XRCC5 [4]; MMEJ: ERCC1 [2], ERCC4 [2], EXO1 [1], LIG3 [1], NBN [4], POLD1 [1], XRCC1 [2]; HR: BARD1 [1], BLM [4], BRCA1 [7], BRCA2 [5], BRIP1 [5], EXO1 [1], NBN [4], PARP1 [5], RAD51 [7], RAD52 [1], RAD54L [1], WRN [5], XRCC3 [1]; FANCONI: BLM [4], BRCA1 [7], BRCA2 [5], BRIP1 [5], ERCC1 [2], ERCC4 [2], FANCA [9]; DR: MGMT [4]; TLS: BLM [4], BRIP1 [5], FANCA [9], PCNA [3]