- Research article
- Open Access
- Open Peer Review
Genotypes and haplotypes of the VEGF gene and survival in locally advanced non-small cell lung cancer patients treated with chemoradiotherapy
- Xiaoxiang Guan†1,
- Ming Yin†1,
- Qingyi Wei1Email author,
- Hui Zhao1,
- Zhensheng Liu1,
- Li-E Wang1,
- Xianglin Yuan2,
- Michael S O'Reilly2,
- Ritsuko Komaki2 and
- Zhongxing Liao2
© Guan et al; licensee BioMed Central Ltd. 2010
- Received: 5 April 2010
- Accepted: 16 August 2010
- Published: 16 August 2010
Vascular endothelial growth factor (VEGF) is a major mediator of angiogenesis involving in carcinogenesis, including lung cancer. We hypothesized that VEGF polymorphisms may affect survival outcomes among locally advanced non-small cell lung cancer (LA-NSCLC) patients.
We genotyped three potentially functional VEGF variants [-460 T > C (rs833061), -634 G > C (rs2010963), and +936 C > T (rs3025039)] and estimated haplotypes in 124 Caucasian patients with LA-NSCLC treated with definitive radiotherapy. We used Kaplan-Meier log-rank tests, and Cox proportional hazard models to evaluate the association between VEGF variants and overall survival (OS).
Gender, Karnofsky's performance scores (KPS) and clinical stage seemed to influence the OS. The variant C genotypes were independently associated with significantly improved OS (CT+CC vs. TT: adjusted hazard ratio [HR] = 0.58; 95% confidence interval [CI] = 0.37-0.92, P = 0.022), compared with the VEGF -460 TT genotype.
Our study suggests that VEGF -460 C genotypes may be associated with a better survival of LA-NSCLC patients after chemoradiotherapy. Large studies are needed to confirm our findings.
- Vascular Endothelial Growth Factor
- Overall Survival
- NSCLC Patient
- Vascular Endothelial Growth Factor Expression
- Vascular Endothelial Growth Factor Gene
Non-small cell lung cancer (NSCLC) accounts for 89% of all lung cancer, and 30% of NSCLC patients present with locally-advanced unresectable tumors (unresectable stage IIIa and IIIb) . Radiotherapy combined with chemotherapy, either sequentially or concurrently, is the standard treatment regimen for these patients, which, however, have resulted in unsatisfactory prognosis, with a 5-year survival rate of about 10-15% , and a median survival time (MST) of 16-18 months [2, 3]. There has been a persistent interest in search for readily accessible molecular markers that may provide therapeutic benefits by predicting clinical outcomes of these locally advanced NSCLC (LA-NSCLC) on an individual basis.
Angiogenesis is an essential process in the development, growth, and metastasis of malignant tumors including lung cancer . Vascular endothelial growth factor (VEGF) is one of the most potent and predominant mediators of angiogenesis, which stimulate vascular endothelial cell growth, survival, and proliferation. Recent investigation has further revealed that VEGF acts as a mitogenic and survival signal for the tumor cell itself, indicating a broader range of tumor-promoting effects. Therefore, VEGF stands as a good candidate for prognostic biomarkers in cancer patients. Indeed, most tumors produce VEGF, whereas inhibition of the VEGF signaling significantly inhibits tumor growth in vivo . In NSCLC, it has been found that a high expression of VEGF protein or mRNA was associated with increased tumor angiogenesis, early tumor relapse and reduced survival time [6–8]. A recent report further linked some functional VEGF polymorphisms with prognosis of early stage (stage I and II) NSCLC, probably through regulation of VEGF expression . However, LA-NSCLC accounts for a significant proportion of lung cancer, and it is not known if VEGF polymorphisms are associated with prognosis within this particular population.
Previous studies primarily focused on three common functional single nucleotide polymorphisms of the VEGF gene, including the -460 T > C, -634 G > C (also assigned as +405 G > C) and +936 C > T (minor allele frequency = 0.422, 0.431 and 0.222 in Caucasians, respectively, according to the Hapmap database). The -460 T > C SNP is located in the promoter region and may influence the promoter activity ; the -634 G > C SNP lies within the 5'-untranslated region and may affect the transcriptional factor binding affinity ; the +936 C > T SNP is located in the 3'-untranslated region and has been associated with lower VEGF plasma levels . In the present study, we evaluated the association of these three potentially functional VEGF SNPs (i.e., -460 T > C, -634 G > C [also assigned as +405 G > C] and +936 C > T) with overall survival (OS) of LA-NSCLC patients.
Clinical data were derived from a large dataset of 576 NSCLC patients established at The University of Texas M. D. Anderson Cancer Center (Houston, TX), in which patients were recruited and histologically confirmed between Oct. 1998 and Nov. 2006. Details of this study population have been described previously . Briefly, this analysis consisted of 124 Caucasian patients with stage IIIa or IIIb NSCLC according to the TNM staging system, a relatively homogenous group that was treated by chemoradiotherapy. Those patients who had surgical resection, or had been treated elsewhere before coming to M. D. Anderson were excluded from the analysis. The study protocol was approved by the M. D. Anderson Cancer Center institutional review board and informed consents were waived. We complied with Health Insurance Portability and Accountability Act (HIPAA) regulations.
Genomic DNA was extracted from the buffy coat fraction of each blood sample by using a Blood Mini Kit (Qiagen, Valencia, CA) according to the manufacturer's instructions. DNA purity and concentrations were determined by spectrophotometric measurement of absorbance at 260 and 280 nm by UV spectrophotometer. The selected three VEGF SNPs (-460 T > C/rs833061, -634 G > C/rs2010963, and +936 C > T/rs3025039) were genotyped using the polymerase chain reaction (PCR) -restriction fragment length polymorphism (RFLP) method. The PCR primers used for -460 T > C, -634 G > C, and +936 C > T polymorphisms were 5'-CTCTTTAGCCAGAGCCGGGG-3' (forward) and 5'-TGGCCTTCTCCCCGCTCCGAC-3' (reverse); 5'-CGACGGCTTGGGGAGATTGC-3' (forward) and 5'-GGGCGGTGTCTGTCTGTCTG-3' (reverse); and 5'-AGGGTTCGGGAACCAGATC-3' (forward) and 5'-CTCGGTGATTTAGCAGCAAG-3' (reverse), respectively. The following PCR conditions were performed: one cycle at 95°C for 5 min; 35 cycles of 95°C for 30 s, 60°C for 30 s, and 72°C for 45 s; and a final extension at 72°C for 10 min. The PCR products were studied after digestion with BsaHI, BsmFI, and NlaIII restriction enzymes. Genotypes of these VEGF SNPs were determined as previously reported . For the PCR-RFLP-based genotyping assay, two research assistants independently read the gel pictures, and the genotyping was repeated if there was a disagreement of the result. We selected 10% of the samples for replication, and the results were 100% concordant.
The two-sided χ2 and Student t tests were performed to determine any statistically significant differences in the distributions of the VEGF genotypes by the demographic variables and clinical features. We used the Kaplan-Meier estimates to evaluate OS among three genotype groups, and the log-rank test to test for equality of the survival distributions. We conducted univariate analysis and used multivariate Cox proportional hazard models to estimate the effect of each SNP on survival with or without other confounding factors. Haplotype frequencies and individual haplotypes were generated using SAS PROC HAPLOTYPE. The associations between haplotype and overall survival (OS) were determined using a dominant genetic model to preserve statistical power. All analyses were performed using SAS software (version 9.1; SAS Institute, Cary, NC).
Characteristics of the study population (n = 124) and overall survival
No. of Patients (%)
No. of Deaths (%)*
MST (95% CI, month)
≤ 60 years
> 60 years
VEGFgenotypes and NSCLC survival
Association between VEGF genotypes and overall survival
Deaths No. (%)*
MST (95% CI, month)
Crude HR (95% CI)
Adjusted HR (95% CI)
VEGF-460T > C (rs833061)
VEGF -634G > C (rs2010963)
VEGF +936C > T (rs3025039)
To determine if the influence of VEGF SNPs was substantially affected by tumor stage, we further made stratified analyses by separating the patients into two subgroups, stages IIIa and IIIb. We found that none of the three SNPs showed significant influence on OS, except for the CT genotype of VEGF -460 T > C SNP, which was marginally associated with increased OS in NSCLC patients of stage IIIb (adjusted HR = 0.56; 95% CI, 0.30-1.05, P = 0.071 and other data not shown).
VEGFhaplotypes and NSCLC survival
We further explored the haplotypes to evaluate the combined effect of the three polymorphisms on NSCLC survivals. There were five haplotypes with frequencies > 5% among all cases, and other less common haplotypes (frequencies < 5%) were combined into one group. The five most common haplotypes in the patients were -460C/-634G/+936C (C-G-C), T-C-C, T-G-C, T-C-T, and C-C-C with the respective frequencies of 38.8%, 23.8%, 17.7%, 8.8% and 5.4%, which were similar to those reported in the other Caucasian populations . However, we did not find a significant impact on OS from the other haplotypes, compared to the most common C-G-C haplotype (data not shown).
Several studies have reported the association between VEGF polymorphisms and progress and survival of different cancers [16–19], but no study has investigated the association between the VEGF polymorphisms and LA-NSCLC patients' survival to date. To reduce confounding effects of clinical parameters on the association, we limited our study subjects to a group of 124 Caucasian patients with homogenous stage IIIa and IIIb NSCLC, who received well-documented definitive chemoradiotherapy as previously described . We found that the VEGF - 460 C variant genotypes were associated with a significantly improved OS, compared with the VEGF -460 TT genotype.
Summary of the influence of VEGF SNPs on cancer OS
-460T > C, -634G > C, and 936C > T
T for -460T > C
-460T > C, -634G > C, and 936C > T
-460T > C, -1154G > A, -2578C > A, 405G > C, and 936C > T
C for -460T > C, A for -1154G > A, and A for -2578C > A
-460T > C, -634G > C, -1154G > A, -2578C > A, and 936C > T
T for -460T > C, G for -634G > C, C for -2578C > A, and C for 936C > T
-460T > C, 405G > C, and 936C > T
C for 936C > T
-460T > C, 405G > C, and 936C > T
G for 405G > C and C for 936C > T
-634G > C, -2578C > A, and 936C > T
G for -634G > C and T for 936C > T
-116G > A, -460T > C, 405G > C, and 936C > T
C for -460T > C and T for 936C > T
-634G > C, -2578C > A, and -1154G > A
C for -2578C > A
-634G > C, -1154G > A, and -2578C > A
-634G > C, -2578C > A, -1154G > A, and 936C > T
C for -634G > C
-460T > C, 405G > C, and 936C > T
C for -460T > C, and G for 405G > C
It is not clear how the VEGF -460 C allele contributes to a better survival in LA-NSCLC patients. A previous in vitro study indicated that the T allele of the VEGF -460 T > C polymorphism located in the promoter of the VEGF gene was associated with a decreased VEGF promoter activity . Hence, the VEGF -460 C allele may be associated with an increased VEGF expression, which would promote tumor angiogenesis. However, the majority of NSCLC patients included in the current study received chemotherapy in addition to radiotherapy (112 out of 124). It is possible that the increased tumor vasculature may enhance radiotherapy efficacy through inhibiting tumor radioresistance from radiation-induced hypoxia, or facilitate the delivery of chemotherapeutic agents to the tumor site and may have led to enhanced synergistic effect with radiotherapy. Or, the VEGF -460 C allele has some additional unknown biological functions, besides regulation of mRNA expression. Further mechanistic studies are required to clarify this issue.
The strength of this study is that we included patients with stage IIIa and IIIb only, who received radiotherapy mostly in the range of 60-70 Gy with detailed OS data. However, there are several limitations. First, the study could not address the mechanism of how the VEGF polymorphisms influence the survival outcomes of lung cancer patients. Previous study demonstrated a good correlation between TC/CC genotypes of the VEGF -460 T > C polymorphism and increased serum VEGF levels in colorectal cancer patients . An increased serum VEGF expression was also observed in ovarian cancer patients carrying -634 C allele . We are collecting related data to determine if there is such correlation between the VEGF polymorphisms and the VEGF protein levels in NSCLC patients. Secondly, we only included three common functional, promoter VEGF SNPs, which is far from comprehensive. Indeed, the VEGF gene is highly polymorphic with at least 140 variants reported to date http://0-www.ncbi.nlm.nih.gov.brum.beds.ac.uk/SNP/. Some important functional SNPs may be missed or the observed association may result from genetic linkages with other untyped SNPs. Thirdly, our sample size is not big enough to allow evaluation of interactions between the studied polymorphisms and dose of radiation therapy. For the same reason, there appeared a wide confidence interval in our stratified analyses by tumor stage and the significance was lost due to the reduced statistical power. Therefore, a complete investigation of tagging SNPs in larger samples may be necessary in future studies.
In summary, we found that the VEGF -460 C allele may be associated with a better survival of LA-NSCLC patients treated with chemoradiotherapy. Future prospective studies with large sample sizes and better study designs are required to confirm our findings.
We thank Jiangong Niu, Jianzhong He and Kejing Xu and for their technical assistance. This study was in part supported by National Institutes of Health grants R01 ES11740 and R01 CA 131274 (to Q. W.) and P30 CA 16672 (to M. D. Anderson Cancer Center).
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